Semagacestat, are not true ?-secretase inhibitors as primarily assumed, but alternatively they may result in accumulation of toxic intraneuronal Aß.
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‘Usually in Alzheimer’s disease, large amounts of Amyloid-β peptide (Aβ) get accumulated, and thereby a range of γ-Secretase inhibitors were designed to inhibit the enzymatic activity that produces Aβ peptide.
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Osaka University scientists found that some potential γ-secretase inhibitors such as semagacestat, which were used in large clinical trials failed because they did not function as true inhibitors as originally expected, but rather caused a significant accumulation of toxic intraneuronal Aβ peptide. 
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They proved this by introducing an original method to measure direct intracellular products of γ-secretase. They commented that the application of their evaluation method might help develop truly effective drugs for Alzheimer’s disease (AD).
The study can be seen in Cell Reports and provides an explanation for why the clinical trials for Alzheimer’s disease drugs have failed and gives new light on the discord between preclinical and clinical findings.
"Aβ accumulates in the brain at the very early stages of Alzheimer’s disease," explains Osaka University Associate Professor Masayasu Okochi, an expert on the disease who managed the project.
"Aβ generation is based on the activity of presenilin/γ-secretase which mediates the cellular production of Aβ."
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To understand this surprising finding, Okochi considered whether semagacestat is indeed a γ-secretase inhibitor. In this study, he and colleagues revealed that semagacestat does not really inhibit the target function, i.e., the cleavage performed by γ-secretase (γ-cleavage).
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Surprisingly, non-transition state analog γ-secretase inhibitors including semagacestat did not decrease but rather increased the levels of γ-by-products.
This finding shattered the belief that these compounds truly inhibit the proteolytic function of γ-secretase and made the researchers "look" inside neurons for further assessment.
As predicted from the increased level of γ-byproducts, an accumulation of Aβ was found inside neurons derived from human iPS cells and various types of cultured cells, although semagacestat did in fact decrease secreted Aβ, as has been previously reported.
These results suggested to Okochi that semagacestat is not, in fact, a γ-secretase inhibitor, which is why he uses the term "pseudo γ-secretase inhibitor" in the study.
Clinical tests of semagacestat tended to judge the drug based on Aβ secretion but not γ-byproducts, which could explain why pseudo γ-secretase inhibitors have repeatedly been mislabeled.
"We found the type of assay gives different results. In our assay, we found γ-byproducts in the cell membrane. Semagacestat may prevent the release of γ-byproducts from the membrane but not the generation of γ-byproducts," he said.
Ironically, notes Okochi, considering his findings, he argues the failed clinical trials affirm the Aβ hypothesis.
"I believe normalization of production and secretion of Aβ by sharpening γ-secretase is the right approach to treating Alzheimer’s disease. Our tests suggest that molecularly targeted therapy should be thoroughly checked from all angles before its application to clinical studies.
The new function of γ-secretase suggested in this study needs further analysis, which will contribute to the development of truly effective drugs for Alzheimer’s disease and several types of cancer," he said.
Source-Eurekalert